Books like Star Trek The Lost Era - Deny Thy Father by Jeff Mariotte

Captain Demora Sulu and former commander John Harriman race against time to unravel the mysteries of Rejarris II and rescue missing crew members amid a looming Tzenkethi threat.

The year is 2336. For twelve years, she was captain of the Federation's flagship. But while her exploits as commander of the USS Enterprise NCC-1701-C are legend, little has been revealed about Rachel Garrett, her vessel, or the unusual men and women of her crew. Until now. When the archaeological find of the decade offers possible hints about an earlier Cardassian civilization, it attracts not merely those seeking to quench their thirst for knowledge, but also parties with far less noble interests. Among the latter is the Asfar Qatala, a notorious criminal cartel with a disturbing connection to one of the Enterprise's highest-ranking officers. Now Captain Garrett and her crew are swept into a maelstrom of kidnapping, extortion, and murder – as well as a desperate, secret struggle between the Qatala and its chief rival, the fledgling Orion Syndicate. And beneath the surface of the frozen world on which the proto-Cardassian discovery was made, another drama is playing out that will force Garrett to make the most difficult decision of her career… amid ruins reputed to link the living with the ancient dead.

The U.S.S. Enterprise is infected by a mysterious alien life form that consumes inorganic matter, threatening to destroy the ship and the Federation. Captain Picard defies orders to save his crew in a desperate battle against a malevolent force.

Captain Kirk and the Enterprise crew encounter mysterious ancient "windows" on the ruins of Careta IV, trapping them in an alien realm where survival and sanity are at stake.

After a Romulan experiment on the harsh world Hellguard, half‑Vulcan scientist Saavik is rescued by Spock and later sentenced to a lonely post on Vulcan. When new threats emerge, she must confront her past, question loyalties, and uncover the truth behind the doomed survivors.

The starship Enterprise investigates a series of brutal attacks on Federation colonies, uncovering a deadly alien threat that could jeopardize the entire Federation.

The year is 2360. She was trained to be a killing machine. Abandoned as a child, without home or family, past or future, Zetha survived only by her own cunning in the back alleys of Romulus before being taken by the Tal Shiar and remade into one of its deadliest weapons. But Zetha is about to undertake a mission unlike any in her experience. The mysterious return of a virulent scourge thought to be long extinct threatens devastation on a scale almost too horrific to contemplate. Zetha's only hope of stopping it is across the Neutral Zone – among the enemies of Romulus. Now Admiral Uhura, centenarian chief of Starfleet Intelligence, must decide what to do with the knowledge Zetha has risked her life to bring to her. In order to stop the spread of the disease that is already ravaging the Romulan Empire, Uhura must assign a hand-picked team of Starfleet officers to covertly trace the contagion to its source – and do whatever is necessary to contain it. But the world awaiting Lieutenant Benjamin Sisko, Lieutenant Tuvok, Dr. Selar, and Zetha herself is a hot zone of secrets, deceptions, and subtle machinations revealing an imminent holocaust beyond anything the away team expected, or what they could hope to combat.

The year is 2311. It is a year of infamy, a year that later generations will remember as one that altered the course of history at the cost of thousands of lives. It is the year of the Tomed Incident, and its tale can at last be told. In the midst of escalating political tensions among the Klingons, the Romulans, and the Federation, Starfleet goes forward with the inaugural flight of Universe, a prototype starship that promises to revolutionize space exploration. But the Universe experiment results in disaster, ravaging a region of space dangerously close to the Romulan Star Empire, apparently confirming suspicions that the Federation has begun testing a weapon of mass destruction. As the military buildup accelerates on both sides of the Romulan Neutral Zone, Captain John Harriman of the Federation flagship USS Enterprise-B is fated for a final confrontation with his oldest enemy at a flashpoint in history – with the Beta Quadrant one wrong move from the outbreak of total war.

In 2298, Commander Hikaru Sulu of the USS Excelsior faces a deadly clash with the Tholian Assembly and a mysterious new foe, the Neyel, forcing him to choose between protecting fragile peace and confronting his past.

Two legendary captains reunite in the USS Enterprise to confront a superweapon threat that could endanger billions.